How to cite¶
GREEN-DB¶
If you use any information from GREEN-DB please cite: GREEN-DB: a framework for the annotation and prioritization of non-coding regulatory variants in whole-genome sequencing Giacopuzzi E., Popitsch N., Taylor JC. BiorXiv (2020)
GREEN-VARAN¶
When you use greenvaran for annotation please cite
Giacopuzzi E., Popitsch N., Taylor JC. BiorXiv (2021)
If you use the GREEN-VARAN Nextflow workflow for additional annotations also cite
Brent S. Pedersen, Ryan M. Layer & Aaron R. Quinlan. Genome Biology volume 17, Article number: 118 (2016)
If you include annotation with a prediction score please also cite the corresponding paper
| Score | PUBMED ID |
|---|---|
| CADD | 30371827 |
| DANN | 25338716 |
| EIGEN | 26727659 |
| ExPecto | 30013180 |
| FATHMM-MKL | 25583119 |
| FATHMM-XF | 28968714 |
| FINSURF | doi.org/10.1101/2021.05.03.442347 |
| FIRE | 28961785 |
| GenoCanyon | 26015273 |
| GenoSkyline-plus | 27058395 |
| GWAVA | 24487584 |
| LinSight | 28288115 |
| NCBoost | 30744685 |
| ncER | 31748530 |
| ReMM | 27569544 |
Population AF¶
If you use population AF annotation with GREEN-VARAN workflow also cite the gnomAD paper: The mutational constraint spectrum quantified from variation in 141,456 humans